#-*- conding: utf-8 -*- import os import warnings import logging logger = logging.getLogger(__name__) from pelican import readers from pelican import signals from pelican import settings knitr = None rmd = False def initsignal(pelicanobj): global knitr, rmd, robjects try: with warnings.catch_warnings(): warnings.simplefilter("ignore") from rpy2.robjects.packages import importr import rpy2.robjects as robjects knitr = importr('knitr') idx = knitr.opts_knit.names.index('set') PATH = pelicanobj.settings.get('PATH','%s/content' % settings.DEFAULT_CONFIG.get('PATH')) logger.debug("RMD_READER PATH = %s", PATH) knitr.opts_knit[idx](**{'base.dir': PATH}) idx = knitr.opts_chunk.names.index('set') knitroptschunk = pelicanobj.settings.get('RMD_READER_KNITR_OPTS_CHUNK', None) if knitroptschunk is not None: knitr.opts_chunk[idx](**{str(k): v for k,v in knitroptschunk.items()}) rmd = True except ImportError as ex: rmd = False class RmdReader(readers.BaseReader): file_extensions = ['Rmd', 'rmd'] @property def enabled(): return rmd # You need to have a read method, which takes a filename and returns # some content and the associated metadata. def read(self, filename): """Parse content and metadata of markdown files""" QUIET = self.settings.get('RMD_READER_KNITR_QUIET', True) ENCODING = self.settings.get('RMD_READER_KNITR_ENCODING', 'UTF-8') CLEANUP = self.settings.get('RMD_READER_CLEANUP', True) RENAME_PLOT = self.settings.get('RMD_READER_RENAME_PLOT', True) logger.debug("RMD_READER_KNITR_QUIET = %s", QUIET) logger.debug("RMD_READER_KNITR_QUIET = %s", ENCODING) logger.debug("RMD_READER_CLEANUP = %s", CLEANUP) logger.debug("RMD_READER_RENAME_PLOT = %s", RENAME_PLOT) # replace single backslashes with double backslashes filename = filename.replace('\\', '\\\\') # parse Rmd file - generate md file md_filename = filename.replace('.Rmd', '.aux').replace('.rmd', '.aux') if RENAME_PLOT: chunk_label = os.path.splitext(os.path.basename(filename))[0] logger.debug(chunk_label) robjects.r(''' opts_knit$set(unnamed.chunk.label="{unnamed_chunk_label}") render_markdown() hook_plot <- knit_hooks$get('plot') knit_hooks$set(plot=function(x, options) hook_plot(paste0("{{filename}}/", x), options)) '''.format(unnamed_chunk_label=chunk_label)) knitr.knit(filename, md_filename, quiet=QUIET, encoding=ENCODING) # read md file - create a MarkdownReader md_reader = readers.MarkdownReader(self.settings) content, metadata = md_reader.read(md_filename) # remove md file if CLEANUP: os.remove(md_filename) return content, metadata def add_reader(readers): readers.reader_classes['rmd'] = RmdReader def register(): signals.readers_init.connect(add_reader) signals.initialized.connect(initsignal)