""" histogram.py The functions in this module use a representation of a histogram that is a tuple containing an arr of N bin values, an array of N bin errors(symmetric) and an array of N+1 bin edges(N lower edges + 1 upper edge). For 2d histograms, It is similar, but the arrays are two dimensional and there are separate arrays for x-edges and y-edges. """ import numpy as np from scipy.optimize import curve_fit def hist(th1, rescale_x=1.0, rescale_y=1.0): nbins = th1.GetNbinsX() edges = np.zeros(nbins+1, np.float32) values = np.zeros(nbins, np.float32) errors = np.zeros(nbins, np.float32) for i in range(nbins): edges[i] = th1.GetXaxis().GetBinLowEdge(i+1) values[i] = th1.GetBinContent(i+1) errors[i] = th1.GetBinError(i+1) edges[nbins] = th1.GetXaxis().GetBinUpEdge(nbins) edges *= rescale_x values *= rescale_y errors *= rescale_y return values, errors, edges def hist_bin_centers(h): _, _, edges = h return (edges[:-1] + edges[1:])/2.0 def hist_slice(h, range_): values, errors, edges = h lim_low, lim_high = range_ slice_ = np.logical_and(edges[:-1] > lim_low, edges[1:] < lim_high) last = len(slice_) - np.argmax(slice_[::-1]) return (values[slice_], errors[slice_], np.concatenate([edges[:-1][slice_], [edges[last]]])) def hist_add(*hs): if len(hs) == 0: return np.zeros(0) vals, errs, edges = zip(*hs) return np.sum(vals, axis=0), np.sqrt(np.sum([err*err for err in errs], axis=0)), edges[0] def hist_integral(h, times_bin_width=True): values, errors, edges = h if times_bin_width: bin_widths = [abs(x2 - x1) for x1, x2 in zip(edges[:-1], edges[1:])] return sum(val*width for val, width in zip(values, bin_widths)) else: return sum(values) def hist_scale(h, scale): values, errors, edges = h return values*scale, errors*scale, edges def hist_norm(h, norm=1): scale = norm/np.sum(h[0]) return hist_scale(h, scale) def hist_mean(h): xs = hist_bin_centers(h) ys, _, _ = h return sum(x*y for x, y in zip(xs, ys)) / sum(ys) def hist_var(h): xs = hist_bin_centers(h) ys, _, _ = h mean = sum(x*y for x, y in zip(xs, ys)) / sum(ys) mean2 = sum((x**2)*y for x, y in zip(xs, ys)) / sum(ys) return mean2 - mean**2 def hist_std(h): return np.sqrt(hist_var(h)) def hist_stats(h): return {'int': hist_integral(h), 'sum': hist_integral(h, False), 'mean': hist_mean(h), 'var': hist_var(h), 'std': hist_std(h)} # def hist_slice2d(h, range_): # values, errors, xs, ys = h # last = len(slice_) - np.argmax(slice_[::-1]) # (xlim_low, xlim_high), (ylim_low, ylim_high) = range_ # slice_ = np.logical_and(xs[:-1, :-1] > xlim_low, xs[1:, 1:] < xlim_high, # ys[:-1, :-1] > ylim_low, ys[1:, 1:] < ylim_high) # last = len(slice_) - np.argmax(slice_[::-1]) # return (values[slice_], # errors[slice_], # np.concatenate([edges[:-1][slice_], [edges[last]]])) def hist_fit(h, f, p0=None): values, errors, edges = h xs = hist_bin_centers(h) # popt, pcov = curve_fit(f, xs, values, p0=p0, sigma=errors) popt, pcov = curve_fit(f, xs, values, p0=p0) return popt, pcov def hist_rebin(h, range_, nbins): raise NotImplementedError() def hist2d(th2, rescale_x=1.0, rescale_y=1.0, rescale_z=1.0): """ Converts TH2 object to something amenable to plotting w/ matplotlab's pcolormesh. """ nbins_x = th2.GetNbinsX() nbins_y = th2.GetNbinsY() xs = np.zeros((nbins_y+1, nbins_x+1), np.float32) ys = np.zeros((nbins_y+1, nbins_x+1), np.float32) values = np.zeros((nbins_y, nbins_x), np.float32) errors = np.zeros((nbins_y, nbins_x), np.float32) for i in range(nbins_x): for j in range(nbins_y): xs[j][i] = th2.GetXaxis().GetBinLowEdge(i+1) ys[j][i] = th2.GetYaxis().GetBinLowEdge(j+1) values[j][i] = th2.GetBinContent(i+1, j+1) errors[j][i] = th2.GetBinError(i+1, j+1) xs[nbins_y][i] = th2.GetXaxis().GetBinUpEdge(i) ys[nbins_y][i] = th2.GetYaxis().GetBinUpEdge(nbins_y) for j in range(nbins_y+1): xs[j][nbins_x] = th2.GetXaxis().GetBinUpEdge(nbins_x) ys[j][nbins_x] = th2.GetYaxis().GetBinUpEdge(j) xs *= rescale_x ys *= rescale_y values *= rescale_z errors *= rescale_z return values, errors, xs, ys def hist2d_norm(h, norm=1, axis=None): """ :param h: :param norm: value to normalize the sum of axis to :param axis: which axis to normalize None is the sum over all bins, 0 is columns, 1 is rows. :return: The normalized histogram """ values, errors, xs, ys = h with np.errstate(divide='ignore'): scale_values = norm / np.sum(values, axis=axis) scale_values[scale_values == np.inf] = 1 scale_values[scale_values == -np.inf] = 1 if axis == 1: scale_values.shape = (scale_values.shape[0], 1) values = values * scale_values errors = errors * scale_values return values, errors, xs.copy(), ys.copy()