#!/usr/bin/env bash
# Converts all found jupyter notebooks to html and places them in the specified
# output directory. This is so they can be incorportated into the doxygen docs
# of the project.
set -e
if [ $# -lt 2 ]
then
    echo "Usage: $0 [nbconvert-exe] [output_directory] (--update)"
    exit 0
fi
if [ "$#" -eq 3 ] && [ "$3" == "--update" ]
then
    exec_opt="--ExecutePreprocessor.enabled=True"
else
    exec_opt=""
fi

nb_files=$(find . -type f -name "*.ipynb" ! -path "*/.ipynb_checkpoints/*")
while read -r nb_file; do
    echo "Converting file: $nb_file"
#     echo $1 --to html --template full $exec_opt --output-dir "$2" $nb_file
    $1 --to html --template full $exec_opt --output-dir "$2" "$nb_file"
done <<< "$nb_files"